Chewy Fresh Milled Chocolate Chip Cookies

These fresh milled chocolate chip cookies are chewy through the center with lightly crisp edges and plenty of melted chocolate in every bite. They’re not cakey, not flat—just a well-balanced, classic cookie that’s easy to make and hard to mess up.

Milling your own soft white wheat adds depth and a better overall texture than store-bought flour, without making the cookies dense or heavy.

If you’ve enjoyed my fresh milled oatmeal raisin cookies, brownies, or gingerbread cookies, this recipe belongs right alongside those—simple ingredients, clear steps, and results you can count on.

Fresh milled flour chocolate chip cookies with crisp golden edges and soft, chewy centers baking on parchment paper.

Why You’ll Love This Recipe

  • A true from-scratch classic: Soft. Chewy. Loaded with rich chocolate flavor. These cookies deliver that familiar homemade taste that feels warm, comforting, and never boring.
  • Made with 100% freshly milled flour: Soft white wheat adds natural oils, fuller flavor, and a tender crumb you simply won’t get from standard all-purpose flour — one of the many reasons fresh-milled grain transforms texture, taste, and overall baking results (all covered in my full guide on the benefits of fresh milled flour).
  • Simple ingredients, real results: No complicated steps. No fancy tools. Just reliable, everyday baking that turns out right every time.
  • Easy to make your own: Add chopped walnuts, dark chocolate chunks, or a light sprinkle of flaky sea salt depending on your mood.
  • Perfect for baking ahead: These freeze beautifully, making them ideal for stocking the freezer or baking in batches.
Fresh milled chocolate chip cookies cooling on a metal rack, showing golden crisp edges and tender centers.

Why Fresh-Milled Soft White Wheat Flour Works So Well in Cookies

Fresh-milled soft white wheat contains natural oils and finely ground bran that create a tender crumb and soft chew without making the cookies dense. Instead of drying out quickly like cookies made with store-bought flour, these stay moist, flavorful, and bakery-soft even as they cool, with a depth of flavor you simply can’t replicate any other way.

Ingredients

  • Butter: Adds richness, moisture, and that classic from-scratch flavor. Melted butter creates a softer, chewier cookie, while softened butter gives slightly more structure.
  • White sugar: Helps create lightly crisp edges and contributes to browning and spread.
  • Light brown sugar: Brings moisture and chewiness, along with a subtle caramel depth that balances the chocolate.
  • Vanilla extract: Enhances the overall flavor with warm notes.
  • Eggs: Provide structure and help bind the dough while keeping the cookies soft and tender.
  • Fresh milled soft white wheat flour: The heart of the recipe. Adds natural oils, wholesome flavor, and a tender crumb you won’t get from store-bought flour.
  • Baking powder: Gives the cookies just enough lift for a soft, slightly puffy texture.
  • Baking soda: Helps with spread and contributes to that classic cookie shape and browning.
  • Sea Salt: Balances the sweetness and makes the flavor stand out.
  • Chocolate chips: Add rich pockets of melted chocolate throughout each bite.
Fresh milled chocolate chip cookies on a cooling rack, highlighting their rustic shape and chewy texture.

How to Make Fresh Milled Chocolate Chip Cookies

Preheat oven to 375°F. Line baking sheets with parchment paper.

  1. Measure out 390 grams of soft white wheat berries, then mill them on the lowest setting (I set my Mockmill to 1) to create a fine, soft flour.
  2. Mix together the butter, white sugar, and brown sugar either with a hand or stand mixer.
  3. Add vanilla and eggs, mixing until fully incorporated.
  4. In a separate bowl, whisk the flour, baking powder, baking soda, and sea salt until evenly combined.
  5. Add dry ingredients to wet ingredients and mix just until combined. Do not overmix.
  6. Fold in chocolate chips gently.
  7. Let the dough rest for 30 minutes before baking. (Don’t skip this!)
  8. Using a 2-tablespoon cookie scoop (or a measuring tablespoon), drop rounded portions of dough onto your lined baking sheets, leaving space between each one for spreading.
  9. Bake for 8-10 minutes, until the edges look lightly golden.
  10. Transfer cookies to a wire rack to cool.
Fresh milled flour chocolate chip cookies cooling on a wire rack, with golden-brown edges, soft centers, and visible chocolate chips.

Freezing Options

Freeze the Dough

Shape the cookie dough into tablespoon-sized portions and set them on a lined tray in a single layer. Freeze until completely firm, then move the frozen portions to a sealed freezer bag or container. Store for up to 3 months. To bake, arrange the frozen dough a few inches apart on a parchment-lined baking sheet. Bake as usual, adding a few minutes to the time.

Freeze Baked Cookies

After the cookies have cooled, stack them with parchment between layers and place in an airtight container. Freeze for up to 3 months. To enjoy, remove the desired amount and let them come back to room temperature on the counter before eating.

FAQ

Yes, you can. Hard white wheat will work, but the cookies will be slightly more structured and less tender than when using soft white wheat. For the softest, classic chocolate chip cookie texture, soft white wheat is still the best choice.

This can happen if the dough wasn’t rested. Rest the dough for 30 minutes before baking.

No, chilling isn’t required.

More Fresh Milled Desserts

Fresh Milled Chocolate Chip Cookies

Easy and chewy chocolate chip cookies made with fresh milled flour for rich flavor, crisp edges, and soft centers in every bite.
Prep Time:15 minutes
Cook Time:10 minutes
Resting Time:30 minutes
Total Time:55 minutes
Servings: 25 cookies (approx.)

Ingredients

  • 3/4 cup butter melted and cooled OR softened
  • 3/4 cup white sugar
  • 3/4 cup light brown sugar
  • 1 Tablespoon vanilla extract
  • 2 eggs
  • 390 grams fresh milled soft white wheat flour
  • 1 teaspoon baking powder
  • 1 teaspoon baking soda
  • 1 teaspoon salt
  • 1 1/2 cups chocolate chips up to 2 cups if desired

Instructions

  1. Measure out 390 grams of soft white wheat berries, then mill them on your grain mill's lowest setting.
  2. Mix together the butter, white sugar, and brown sugar either with a hand or stand mixer.
  3. Add vanilla and eggs, mixing until fully incorporated.
  4. In a separate bowl, whisk the flour, baking powder, baking soda, and sea salt until evenly combined.
  5. Add dry ingredients to wet ingredients and mix just until combined. Then add the chocolate chips. Do not overmix.
  6. Using a 2-tablespoon cookie scoop (or a measuring tablespoon), drop rounded portions of dough onto your lined baking sheets, leaving space between each one for spreading.
  7. Let the dough rest for 30 minutes before baking. (Don't skip this step!)
  8. Bake for 8-10 minutes, until the edges look lightly golden.
  9. Transfer cookies to a wire rack to cool.

Notes

Letting the dough rest for 30 minutes before baking makes a big difference. It helps prevent flat cookies and improves the overall texture, so I don’t recommend skipping this step.

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