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Fresh Milled Flour Sourdough Bagels

Fresh milled flour sourdough bagels made with whole wheat berries and an overnight dough, finished with a classic boil-and-bake for chewy, hearty bagels.
Prep Time 30 minutes
Cook Time 20 minutes
Resting Time 12 hours
Total Time 12 hours 50 minutes
Servings 8 bagels

Equipment

  • Grain mill
  • Kitchen scale
  • Stand mixer with dough hook (or mix by hand)
  • Baking sheet
  • Parchment paper
  • Plastic wrap (or damp towel)
  • Large pot for boiling bagels
  • Slotted spoon of mesh strainer
  • Wire cooling rack

Ingredients

  • 575 g hard wheat berries hard white, hard red, or a blend (I used a 60% hard white / 40% hard red blend — 345 g hard white + 230 g hard red)
  • 290 –320 g water about 1 1/4 c, adjust as needed
  • 100 g active sourdough starter 1/2 c
  • 40 g sugar or honey 2 tbsp
  • 10 g salt 2 tsp

For Boiling

  • 6 cups water
  • 1 tbsp sugar

Instructions

Mill the Flour

  • Mill 575 g hard wheat berries on the lowest setting of your grain mill and set aside.

Mix the Dough

  • Add the sourdough starter, water (290 g), sugar (or honey), and salt to the bowl of a stand mixer and stir to combine.
  • Add the freshly milled flour and use a spatula to bring the dough together as best as possible. The dough will be very stiff — that’s normal for bagels.
  • Change to the dough hook and mix the dough on low speed for 6–7 minutes.
    As the dough mixes, add more water, 10 g at a time, as needed. I usually end up adding 20-30 g more water, for a total of 310-320 g water.
    By the end of kneading, the dough should feel firm and smooth, not sticky, and should pull away from the sides of the bowl while mixing.

Overnight Rest

  • Once mixed, cover the bowl and let it rest at room temperature for 8–12 hours.
    I like to make this before bed and let it sit overnight. It should rise to double its size by the next day.

Divide & Shape

  • Turn the dough out onto a clean work surface. Weigh the finished dough, then divide it evenly into 8 pieces to make even bagels. Shape each piece into a tight ball.
    To shape the bagels:
    Place a dough ball in front of you.
    Press your thumb straight through the center of the dough to create an opening.
    Gently stretch and shape into a ring.
  • Set the shaped bagels onto a parchment-lined baking sheet, spacing them slightly apart.
  • Cover the bagels (I like to use plastic wrap) and let them rise until puffy.
    This usually takes 60–120 minutes, depending on room temperature. I let mine rise for about 2 hours.

Boil the Bagels

  • Preheat oven to 425°F (218°C). Heat 6 cups of water in a large pot; once boiling, add 1 tablespoon of sugar.
  • Once the bagels have risen and are puffy, boil them for 2 minutes per side, working in batches of 3–4 bagels at a time so the pot isn’t crowded.
  • Remove the bagels with a slotted spoon, then place them back on the parchment paper until cool enough to handle.

Add Toppings (Optional)

  • Once cool enough to handle, dip one side of each bagel into your desired toppings, then return them to the parchment-lined baking sheet.

Bake

  • Bake at 425°F (218°C) for 20–25 minutes, until golden brown. I take mine out at 20 minutes.
  • Cool on a wire rack before slicing.

Notes

  • Bagel dough should be firm and smooth, not sticky, and should pull away from the bowl after kneading.
  • Start with the lower amount of water and add more a little at a time as the dough mixes, just until it comes together.
  • Whole-grain sourdough rises more slowly than white flour; look for the dough to become puffy, not doubled.
  • Boil the bagels for the full two minutes per side to achieve a chewy crust.
  • If you don't have a stand mixer, you can knead by hand for 10 minutes.
  • Store baked bagels at room temperature for 2 to 3 days in an airtight container.
  • For longer storage, slice and freeze bagels for up to 3 months.
  • Toast directly from frozen to reheat.