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Fresh Milled Flour Chocolate Crinkle Cookies

These fresh milled flour chocolate crinkle cookies are rich and fudgy, with soft, brownie-like centers, slightly crisp edges, and beautiful powdered sugar crinkles. They’re perfect for Christmas cookie trays, holiday baking, or anytime you’re craving something chocolatey!

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My mom used to make chocolate crinkle cookies around the holidays, so they’ve always been a special cookie to me! I’ve always preferred the thicker, puffier ones over the thin, flat cookies, so I spent quite a bit of time testing and adjusting this recipe to get that texture just right.

If you’re planning your holiday baking, be sure to check out my fresh milled flour gingerbread cookies and snowball cookies, too! They’re a couple of my other favorite Christmas cookies.

A stack of five thick, fresh milled flour chocolate crinkle cookies with cracked powdered sugar tops on a white plate, with a glass of milk and more cookies cooling in the background.

What are Chocolate Crinkle Cookies?

Chocolate crinkle cookies are basically a cross between a brownie and a chocolate chip cookie!

Before baking, the cookie dough is rolled into balls and generously coated in powdered sugar. As the cookies bake, they puff up and crack, letting the rich chocolate peek through the white powdered sugar.

That’s what gives chocolate crinkle cookies their signature snowy, crackled appearance!

Three thick, fresh milled flour chocolate crinkle cookies on a white plate, showing their rich chocolate cracks and generous powdered sugar coating.

Why You’ll Love This Fresh Milled Flour Chocolate Crinkle Cookies Recipe

  • Made with fresh milled flour: Freshly milled whole wheat flour adds flavor and whole grain goodness to a classic chocolate cookie.
  • Rich chocolate flavor: Made with cocoa powder for a deep, delicious chocolate flavor in every bite.
  • Soft and fudgy centers: These cookies have a brownie-like texture with slightly crisp edges.
  • Classic crinkle tops: Rolling the dough in powdered sugar creates those traditional white cracks as the cookies bake.
  • Perfect for the holidays: These cookies make a beautiful addition to Christmas cookie trays and homemade cookie gift boxes.
  • Easy to make ahead: Prepare the dough the night before and bake fresh cookies the next day!
Ingredients for fresh milled flour chocolate crinkle cookies, including soft white wheat berries, cocoa powder, butter, eggs, brown and white sugar, powdered sugar, vanilla, baking powder, and salt.

Ingredients You’ll Need

  • Soft white wheat berries: Freshly milled soft white wheat flour is my favorite choice for cookies because it produces a softer, more tender texture. Spelt or Kamut (Khorasan wheat) could also work well in this recipe, although the texture may vary slightly.
  • Unsweetened cocoa powder: Gives these cookies their rich chocolate flavor. Regular unsweetened cocoa powder works great.
  • Butter: I use grass-fed salted butter for its rich flavor. But feel free to use unsalted butter, just make sure it’s softened to room temperature before mixing.
  • Granulated sugar: I prefer organic cane sugar, which adds sweetness and helps create that classic chewy, brownie-like texture.
  • Brown sugar: I use light brown sugar, but dark brown sugar works great too! It helps give these cookies their soft, chewy centers and adds a little extra richness.
  • Eggs: I use 2 large eggs to help bind the ingredients together and give the cookies structure.
  • Vanilla extract: Enhances the rich chocolate flavor.
  • Baking powder: Helps the cookies rise and develop their signature crinkled tops. You can also use my homemade baking powder recipe!
  • Fine sea salt: I use Redmond Real Salt to balance the sweetness and bring out the chocolate flavor.
  • Powdered sugar: To coat the cookie dough balls before baking to create those beautiful white crinkle tops.

Broken fresh milled flour chocolate crinkle cookie resting on top of whole cookies, showing its thick, soft, fudgy center and powdered sugar coating.

Tips for the Best Fresh Milled Flour Chocolate Crinkle Cookies

Don’t skip chilling the dough. Chocolate crinkle cookie dough is naturally sticky. Refrigerating it for at least 4 hours makes it so much easier to handle and helps prevent excessive spreading while baking.

Don’t overbake the cookies. For soft, fudgy centers, remove the cookies when the edges are set, but the centers still look slightly wet. They’ll continue to firm up as they cool.

Use a cookie scoop. I use a 1-inch cookie scoop to keep the cookies uniform in size so they bake evenly. If you don’t have one, you can use a tablespoon instead.

Always use a cool baking sheet. Never place chilled cookie dough on a hot baking sheet! The heat can soften the butter and make the cookies spread before they even go into the oven. I like to rotate between two baking sheets so one can cool while the other batch is baking.

How to Make Fresh Milled Flour Chocolate Crinkle Cookies

  1. Weigh 170 grams of soft white wheat berries and mill them into fine flour. In a small bowl, whisk together the freshly milled flour, cocoa powder, baking powder, and salt. Set aside.
  2. In a large mixing bowl, use a hand mixer or stand mixer fitted with the paddle attachment to combine the granulated sugar, brown sugar, and softened butter. Mix on medium speed until well combined.
  3. Add the eggs one at a time, mixing after each addition, then mix in the vanilla extract.
  4. Gradually add the dry ingredients to the wet ingredients and mix on low speed just until combined. The dough will be thick and sticky, which is completely normal.
  5. Cover the bowl and refrigerate the dough for at least 4 hours or overnight. This helps firm up the dough so it’s easier to handle and gives the freshly milled flour time to absorb moisture.
  6. Once the dough has chilled, preheat your oven to 375°F and line a baking sheet with parchment paper. Using a 1-inch cookie scoop or tablespoon, scoop out enough dough for one batch and roll each portion between your hands into a nice, round ball.
  7. Roll each dough ball generously in powdered sugar until completely coated, then arrange them a few inches apart on the prepared baking sheet. Keep the remaining dough in the refrigerator between batches.
  8. Bake for 8-10 minutes, or until the edges are firm and the centers are puffed but still look slightly wet. Mine bake perfectly at 9 minutes. Let the cookies cool on the baking sheet for a few minutes before transferring them to a wire rack. Repeat with the remaining chilled dough, making sure to use a cool baking sheet for each batch.
Fesh milled flour chocolate crinkle cookies with cracked powdered sugar tops arranged in rows on a wire cooling rack.

How to Store and Freeze Fresh Milled Flour Chocolate Crinkle Cookies

Room temperature: Store cooled cookies in an airtight container at room temperature for up to 4–5 days.

Refrigerator: You can refrigerate the cookies in an airtight container for up to one week, although they may become slightly firmer when chilled.

Freezer: Freeze baked cookies in a freezer-safe container for up to 3 months. Place parchment paper between layers to prevent sticking.

Freezing cookie dough: Scoop the dough into balls and freeze them on a parchment-lined baking sheet until firm. Transfer to a freezer-safe bag or container and freeze for up to 3 months. When ready to bake, roll the dough balls in powdered sugar and bake, adding a little extra baking time if needed.

Keep in mind that the powdered sugar coating may absorb some moisture during storage, especially after freezing and thawing

Thick, puffy fresh milled flour chocolate crinkle cookies with cracked powdered sugar tops on a white plate, with more cookies cooling on a wire rack and a glass of milk nearby.

FAQ

Yep! While soft white wheat is my favorite for cookies because of its tender texture, spelt, einkorn, or Kamut are also great options to try. Just keep in mind that different grains may give the cookies a slightly different texture. For more information on choosing the right grains for your recipes, check out my free Fresh Milled Flour Conversion Chart.

Chocolate crinkle cookie dough is naturally sticky right after you make it. This is normal! Chilling the dough for at least 3 hours helps firm it up and makes it easier to roll.

You can try substituting ¼ cup of mild-flavored oil for the butter, although I haven’t tested this version. Oil may give the cookies a slightly different texture and cause them to spread more while baking. I like using softened butter for its rich flavor and because it helps create those thicker, puffier cookies!

Absolutely! You can freeze both baked cookies and unbaked cookie dough balls for up to 3 months. For the best appearance, roll unbaked dough balls in powdered sugar just before baking.

More Fresh Milled Flour Cookie Recipes

Fresh Milled Flour Chocolate Crinkle Cookies

These fresh milled flour chocolate crinkle cookies are rich, fudgy, and full of chocolate flavor! Made with freshly milled soft white wheat flour, they bake up thick and puffy with soft, brownie-like centers, slightly crisp edges, and beautiful powdered sugar crinkles.
Prep Time:15 minutes
Cook Time:9 minutes
Chill Time:4 hours
Total Time:4 hours 24 minutes
Servings: 24 cookies

Equipment

  • Grain mill
  • Kitchen scale
  • Stand mixer or hand mixer
  • Baking sheet
  • Parchment paper

Ingredients

  • 170 g soft white wheat berries (see notes)
  • ½ cup unsweetened cocoa powder
  • ½ cup softened butter (113 g)
  • ½ cup granulated sugar
  • ½ cup brown sugar
  • 2 large eggs
  • 1 teaspoon vanilla extract
  • ¼ teaspoon fine sea salt
  • 1 teaspoon baking powder
  • ½ cup powdered sugar for rolling

Instructions

  1. Weigh 170 grams of soft white wheat berries and mill them into fine flour. In a small bowl, whisk together the freshly milled flour, cocoa powder, baking powder, and salt. Set aside.
  2. In a large mixing bowl, use a hand mixer or stand mixer fitted with the paddle attachment to combine the granulated sugar, brown sugar, and softened butter. Mix on medium speed until well combined.
  3. Add the eggs one at a time, mixing after each addition, then mix in the vanilla extract.
  4. Gradually add the dry ingredients to the wet ingredients and mix on low speed just until combined. The dough will be thick and sticky, which is completely normal!
  5. Cover the bowl and refrigerate the dough for at least 4 hours or overnight. This helps firm up the dough so it's easier to handle and gives the freshly milled flour time to absorb moisture.
  6. Once the dough has chilled, preheat your oven to 375°F and line a baking sheet with parchment paper. Using a 1-inch cookie scoop or tablespoon, scoop out enough dough for one batch and roll each portion between your hands into a nice, round ball.
  7. Roll each dough ball generously in powdered sugar until completely coated, then arrange them a few inches apart on the prepared baking sheet. I like to keep the remaining dough in the refrigerator between batches.
  8. Bake for 8-10 minutes, or until the edges are firm and the centers are puffed but still look slightly wet. My bake perfectly at 9 minutes. Let the cookies cool on the baking sheet for a few minutes before transferring them to a wire rack. Repeat with the remaining chilled dough, making sure to use a cool baking sheet for each batch.

Notes

Grain Options: I prefer soft white wheat for its tender texture, but spelt einkorn, or Kamut (or a mix of different grains) are also great options to try! Just keep in mind that the texture may vary slightly depending on the grain you use.
Storing & Freezing: Store baked cookies in an airtight container at room temperature for 4–5 days or refrigerate for up to 1 week. Freeze baked cookies for up to 3 months, separating layers with parchment paper. To freeze unbaked dough, shape into balls and freeze for up to 3 months. Roll in powdered sugar just before baking, adding a little extra baking time if needed. Keep in mind that the powdered sugar coating may absorb moisture during storage, especially after freezing and thawing.

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